PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.078810.1
Common NameCsa_7G328830, WRKY50
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 297aa    MW: 33101.2 Da    PI: 5.8169
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.078810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.94.3e-28102161359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     Dg++WrKYGqK++ gs+fprsY+rC+++   gC ++k+v++s++dp++ e+tY+g+H+++
  Cucsa.078810.1 102 DGFSWRKYGQKDILGSKFPRSYFRCSHRftqGCLATKQVQKSDNDPTIYEVTYKGRHTCN 161
                     9**************************9999***************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-2791162IPR003657WRKY domain
PROSITE profilePS5081121.57495163IPR003657WRKY domain
SMARTSM007741.7E-38100162IPR003657WRKY domain
SuperFamilySSF1182901.31E-24101161IPR003657WRKY domain
PfamPF031065.0E-26102160IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEFLSLIQEL NQGKQLANQL RTHLHPSSSS HGILLIDKIL RSYENALLAL SGGAAASVNS  60
AIAPVNAAVQ DGDVSKKRKV MAKWSEQVKV SSASAVEGPG CDGFSWRKYG QKDILGSKFP  120
RSYFRCSHRF TQGCLATKQV QKSDNDPTIY EVTYKGRHTC NKALHSTNTP QEHQNTFLQH  180
PIPPKQEDKP LQQLHDPLCF MFSSDPIRVK SEDLEYANGG LFQPLRTPSP MFGSEVQDDL  240
SPFRESECSP TFESNDMFGL WCDFETEFVS IPSSMTNISI GDLEECFSFD NLEMFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-131021581669WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9840350.0GU984035.1 Cucumis sativus WRKY protein (WRKY50) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267693.10.0probable WRKY transcription factor 46-like
SwissprotQ9SKD92e-42WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBLE7CEY40.0E7CEY4_CUCSA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2471333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.13e-43WRKY family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Ling J, et al.
    Genome-wide analysis of WRKY gene family in Cucumis sativus.
    BMC Genomics, 2011. 12: p. 471
    [PMID:21955985]
  4. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]